Variant report
| Variant | rs16833201 |
|---|---|
| Chromosome Location | chr3:161398445-161398446 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:161398334..161399929-chr3:161403036..161405549,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs13316495 | 1.00[EUR][1000 genomes] |
| rs13325090 | 1.00[EUR][1000 genomes] |
| rs28559591 | 1.00[EUR][1000 genomes] |
| rs59860665 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59865680 | 1.00[EUR][1000 genomes] |
| rs60125032 | 1.00[EUR][1000 genomes] |
| rs60680460 | 1.00[EUR][1000 genomes] |
| rs60739746 | 1.00[EUR][1000 genomes] |
| rs6780511 | 1.00[EUR][1000 genomes] |
| rs73018577 | 1.00[AMR][1000 genomes] |
| rs73875904 | 1.00[EUR][1000 genomes] |
| rs73877461 | 1.00[EUR][1000 genomes] |
| rs73877481 | 1.00[EUR][1000 genomes] |
| rs73877483 | 1.00[EUR][1000 genomes] |
| rs73877484 | 1.00[EUR][1000 genomes] |
| rs9817978 | 1.00[EUR][1000 genomes] |
| rs9820241 | 1.00[EUR][1000 genomes] |
| rs9830058 | 1.00[EUR][1000 genomes] |
| rs9839478 | 1.00[EUR][1000 genomes] |
| rs9867530 | 1.00[EUR][1000 genomes] |
| rs9876196 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | esv2422309 | chr3:161242389-161425932 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv877711 | chr3:161275848-161486665 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1004255 | chr3:161340249-161476537 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161398200-161399000 | Enhancers | Dnd41 | blood |
