Variant report

Variant	rs9839478
Chromosome Location	chr3:161576971-161576972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs13316495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13325090	1.00[EUR][1000 genomes]
rs16833201	1.00[EUR][1000 genomes]
rs28559591	1.00[EUR][1000 genomes]
rs55971156	1.00[EUR][1000 genomes]
rs56317862	1.00[EUR][1000 genomes]
rs56852494	1.00[EUR][1000 genomes]
rs57482426	1.00[EUR][1000 genomes]
rs59589204	1.00[EUR][1000 genomes]
rs59860665	1.00[EUR][1000 genomes]
rs59865680	1.00[EUR][1000 genomes]
rs60125032	1.00[EUR][1000 genomes]
rs6780511	1.00[EUR][1000 genomes]
rs73875904	1.00[EUR][1000 genomes]
rs73875974	1.00[EUR][1000 genomes]
rs73875976	1.00[EUR][1000 genomes]
rs73875977	1.00[EUR][1000 genomes]
rs73875978	1.00[EUR][1000 genomes]
rs73875979	1.00[EUR][1000 genomes]
rs73875982	1.00[EUR][1000 genomes]
rs73875985	1.00[EUR][1000 genomes]
rs73875986	1.00[EUR][1000 genomes]
rs73875987	1.00[EUR][1000 genomes]
rs73875988	1.00[EUR][1000 genomes]
rs73875989	1.00[EUR][1000 genomes]
rs73875990	1.00[EUR][1000 genomes]
rs73875991	1.00[EUR][1000 genomes]
rs73875997	1.00[EUR][1000 genomes]
rs73877461	1.00[EUR][1000 genomes]
rs73877481	1.00[EUR][1000 genomes]
rs73877483	1.00[EUR][1000 genomes]
rs73877484	1.00[EUR][1000 genomes]
rs73878504	1.00[EUR][1000 genomes]
rs73878506	1.00[EUR][1000 genomes]
rs73878510	1.00[EUR][1000 genomes]
rs73878511	1.00[EUR][1000 genomes]
rs73878513	1.00[EUR][1000 genomes]
rs73878515	1.00[EUR][1000 genomes]
rs9809342	0.82[ASW][hapmap]
rs9817978	1.00[EUR][1000 genomes]
rs9820241	1.00[EUR][1000 genomes]
rs9830058	1.00[EUR][1000 genomes]
rs9860108	1.00[EUR][1000 genomes]
rs9867530	1.00[EUR][1000 genomes]
rs9876196	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	esv2757901	chr3:161449993-161593770	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759195	chr3:161449993-161593770	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3395930	chr3:161552299-161584754	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161573000-161578000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:161573400-161577400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:161573800-161577600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:161576600-161577000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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