Variant report

Variant	rs73875988
Chromosome Location	chr3:161737361-161737362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161726576..161728684-chr3:161737243..161740058,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12106720	1.00[EUR][1000 genomes]
rs13316495	1.00[EUR][1000 genomes]
rs55971156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56317862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56852494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57482426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59589204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73024767	1.00[EUR][1000 genomes]
rs73026836	1.00[EUR][1000 genomes]
rs73026863	1.00[EUR][1000 genomes]
rs73875974	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875975	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875976	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875977	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875978	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875989	1.00[EUR][1000 genomes]
rs73875990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9817978	1.00[EUR][1000 genomes]
rs9830058	1.00[EUR][1000 genomes]
rs9839478	1.00[EUR][1000 genomes]
rs9860108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9867530	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161733600-161737600	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:161736200-161738000	Enhancers	Brain Germinal Matrix	brain
3	chr3:161736400-161738200	Enhancers	Brain Cingulate Gyrus	brain
4	chr3:161736600-161737400	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:161736600-161738000	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links