Variant report
| Variant | rs73024767 |
|---|---|
| Chromosome Location | chr3:161841290-161841291 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs12106720 | 1.00[EUR][1000 genomes] |
| rs55971156 | 1.00[EUR][1000 genomes] |
| rs56317862 | 1.00[EUR][1000 genomes] |
| rs56852494 | 1.00[EUR][1000 genomes] |
| rs57482426 | 1.00[EUR][1000 genomes] |
| rs59589204 | 1.00[EUR][1000 genomes] |
| rs73026836 | 1.00[EUR][1000 genomes] |
| rs73026863 | 1.00[EUR][1000 genomes] |
| rs73875974 | 1.00[EUR][1000 genomes] |
| rs73875976 | 1.00[EUR][1000 genomes] |
| rs73875977 | 1.00[EUR][1000 genomes] |
| rs73875978 | 1.00[EUR][1000 genomes] |
| rs73875979 | 1.00[EUR][1000 genomes] |
| rs73875982 | 1.00[EUR][1000 genomes] |
| rs73875985 | 1.00[EUR][1000 genomes] |
| rs73875986 | 1.00[EUR][1000 genomes] |
| rs73875987 | 1.00[EUR][1000 genomes] |
| rs73875988 | 1.00[EUR][1000 genomes] |
| rs73875989 | 1.00[EUR][1000 genomes] |
| rs73875990 | 1.00[EUR][1000 genomes] |
| rs73875991 | 1.00[EUR][1000 genomes] |
| rs73875997 | 1.00[EUR][1000 genomes] |
| rs73878504 | 1.00[EUR][1000 genomes] |
| rs73878506 | 1.00[EUR][1000 genomes] |
| rs73878510 | 1.00[EUR][1000 genomes] |
| rs73878511 | 1.00[EUR][1000 genomes] |
| rs73878513 | 1.00[EUR][1000 genomes] |
| rs73878515 | 1.00[EUR][1000 genomes] |
| rs73878540 | 1.00[EUR][1000 genomes] |
| rs73878547 | 1.00[EUR][1000 genomes] |
| rs73878550 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460919 | chr3:161799090-162094430 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv592144 | chr3:161799090-162094430 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv877713 | chr3:161807012-161847016 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv877714 | chr3:161807012-161854219 | Enhancers Flanking Active TSS Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv877715 | chr3:161807012-161862628 | Enhancers Weak transcription Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 6 | nsv877716 | chr3:161817368-161847016 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| 7 | esv2753414 | chr3:161826690-161935978 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 8 | nsv877717 | chr3:161827760-161864213 | Enhancers Active TSS Flanking Active TSS Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 9 | nsv877718 | chr3:161829492-161878713 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161840000-161842400 | Enhancers | Fetal Intestine Large | intestine |
| 2 | chr3:161840200-161841400 | Enhancers | Fetal Intestine Small | intestine |
