Variant report

Variant	rs56317862
Chromosome Location	chr3:161765425-161765426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11712731	1.00[AMR][1000 genomes]
rs12106720	1.00[EUR][1000 genomes]
rs13316495	1.00[EUR][1000 genomes]
rs55971156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56852494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57482426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59589204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73024767	1.00[EUR][1000 genomes]
rs73026836	1.00[EUR][1000 genomes]
rs73026863	1.00[EUR][1000 genomes]
rs73875974	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875975	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875976	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875977	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875978	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875989	1.00[EUR][1000 genomes]
rs73875990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878513	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878540	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878547	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878550	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9817978	1.00[EUR][1000 genomes]
rs9830058	1.00[EUR][1000 genomes]
rs9839478	1.00[EUR][1000 genomes]
rs9860108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9867530	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv460918	chr3:161754109-161791399	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv592143	chr3:161754109-161791399	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161765400-161766000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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