Variant report

Variant	rs73878540
Chromosome Location	chr3:161792582-161792583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11712731	1.00[AMR][1000 genomes]
rs12106720	1.00[EUR][1000 genomes]
rs55971156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56317862	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56852494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57482426	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59589204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73024767	1.00[EUR][1000 genomes]
rs73026836	1.00[EUR][1000 genomes]
rs73026863	1.00[EUR][1000 genomes]
rs73875974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875975	1.00[AMR][1000 genomes]
rs73875976	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875989	1.00[EUR][1000 genomes]
rs73875990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73875997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878504	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878506	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878510	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878511	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878515	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73878550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161789400-161793400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:161790200-161793000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:161790600-161793400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:161791200-161792600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:161792000-161793000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:161792400-161793200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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