Variant report

Variant	rs60273956
Chromosome Location	chr3:161161675-161161676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:161136644..161139076-chr3:161160623..161163367,2	MCF-7	breast:
2	chr3:161087867..161091778-chr3:161159434..161163634,9	MCF-7	breast:
3	chr3:161161602..161163726-chr3:161192340..161193989,2	MCF-7	breast:
4	chr3:161088423..161092396-chr3:161159740..161164169,5	MCF-7	breast:
5	chr3:161156686..161159483-chr3:161160092..161163012,3	MCF-7	breast:
6	chr3:161160203..161162184-chr3:161166453..161168231,2	MCF-7	breast:
7	chr3:161159586..161162271-chr3:161162430..161165084,3	MCF-7	breast:
8	chr3:161137315..161139728-chr3:161159914..161161772,2	MCF-7	breast:
9	chr3:161139196..161140956-chr3:161159538..161162067,2	MCF-7	breast:
10	chr3:161149348..161152131-chr3:161159932..161161916,2	MCF-7	breast:
11	chr3:161145758..161147913-chr3:161160739..161163339,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000234851	Chromatin interaction
ENSG00000196542	Chromatin interaction
ENSG00000269888	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1159250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12163613	1.00[EUR][1000 genomes]
rs16832385	0.97[AFR][1000 genomes]
rs2404344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4560316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55663755	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55819514	0.85[EUR][1000 genomes]
rs58302911	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59808131	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60069838	0.92[EUR][1000 genomes]
rs60786535	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73164106	1.00[EUR][1000 genomes]
rs73164124	1.00[EUR][1000 genomes]
rs73164129	0.92[EUR][1000 genomes]
rs73164132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164149	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164152	1.00[EUR][1000 genomes]
rs73164153	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164176	1.00[EUR][1000 genomes]
rs73164177	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73164178	0.92[EUR][1000 genomes]
rs73164187	0.92[EUR][1000 genomes]
rs73166018	0.80[ASN][1000 genomes]
rs73875621	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
3	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
4	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161161200-161163200	Enhancers	HepG2	liver
2	chr3:161161400-161162600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:161161600-161162200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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