Variant report
| Variant | rs60786535 |
|---|---|
| Chromosome Location | chr3:161149342-161149343 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234851 | Chromatin interaction |
| ENSG00000269888 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1159250 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12163613 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12163614 | 0.88[ASN][1000 genomes] |
| rs2404344 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4560316 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55663755 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55819514 | 0.85[EUR][1000 genomes] |
| rs58302911 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59808131 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60069838 | 0.92[EUR][1000 genomes] |
| rs60273956 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73164106 | 1.00[EUR][1000 genomes] |
| rs73164124 | 1.00[EUR][1000 genomes] |
| rs73164129 | 0.92[EUR][1000 genomes] |
| rs73164132 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73164149 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73164152 | 1.00[EUR][1000 genomes] |
| rs73164153 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73164176 | 1.00[EUR][1000 genomes] |
| rs73164177 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73164178 | 0.92[EUR][1000 genomes] |
| rs73164187 | 0.92[EUR][1000 genomes] |
| rs73875621 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931072 | chr3:160669567-161159779 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 98 gene(s) | inside rSNPs | diseases |
| 2 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 3 | nsv829772 | chr3:161047817-161202554 | Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 88 gene(s) | inside rSNPs | diseases |
| 4 | nsv877710 | chr3:161087857-161245414 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 84 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161149000-161152000 | Weak transcription | HepG2 | liver |
