Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161182193..161184879-chr3:161185126..161188257,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1159250	1.00[EUR][1000 genomes]
rs12163613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2404344	1.00[EUR][1000 genomes]
rs2404345	0.82[AFR][1000 genomes]
rs4560316	1.00[EUR][1000 genomes]
rs55663755	1.00[EUR][1000 genomes]
rs55819514	0.85[EUR][1000 genomes]
rs58302911	1.00[EUR][1000 genomes]
rs59808131	1.00[EUR][1000 genomes]
rs60069838	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60273956	1.00[EUR][1000 genomes]
rs60786535	1.00[EUR][1000 genomes]
rs73162584	0.80[AMR][1000 genomes]
rs73162599	0.80[AMR][1000 genomes]
rs73164106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73164124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164129	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73164132	1.00[EUR][1000 genomes]
rs73164149	1.00[EUR][1000 genomes]
rs73164152	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164153	1.00[EUR][1000 genomes]
rs73164176	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164177	1.00[EUR][1000 genomes]
rs73164178	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73164187	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73164190	0.82[ASN][1000 genomes]
rs73875623	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
3	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
4	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv967084	chr3:161163639-161183247	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161182000-161182600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:161182200-161182600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search: