Variant report

Variant	rs73164124
Chromosome Location	chr3:161159639-161159640
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:161087867..161091778-chr3:161159434..161163634,9	MCF-7	breast:
2	chr3:161159586..161162271-chr3:161162430..161165084,3	MCF-7	breast:
3	chr3:161157860..161160581-chr3:161168208..161171597,3	MCF-7	breast:
4	chr3:161119895..161121991-chr3:161159318..161161280,2	MCF-7	breast:
5	chr3:161139196..161140956-chr3:161159538..161162067,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1159250	1.00[EUR][1000 genomes]
rs12163613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12163614	0.91[AFR][1000 genomes]
rs2404344	1.00[EUR][1000 genomes]
rs2404345	0.90[AFR][1000 genomes]
rs4560316	1.00[EUR][1000 genomes]
rs55663755	1.00[EUR][1000 genomes]
rs55819514	0.85[EUR][1000 genomes]
rs58302911	1.00[EUR][1000 genomes]
rs59808131	1.00[EUR][1000 genomes]
rs60069838	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60273956	1.00[EUR][1000 genomes]
rs60786535	1.00[EUR][1000 genomes]
rs73162584	0.80[AMR][1000 genomes]
rs73162599	0.80[AMR][1000 genomes]
rs73164106	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73164129	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73164132	1.00[EUR][1000 genomes]
rs73164149	1.00[EUR][1000 genomes]
rs73164152	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164153	1.00[EUR][1000 genomes]
rs73164176	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164177	1.00[EUR][1000 genomes]
rs73164178	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73164187	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73164190	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73875621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73875623	0.90[AFR][1000 genomes]
rs73878333	0.97[AFR][1000 genomes]
rs73878336	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
3	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
5	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links