Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:160746924..160750622-chr3:160787755..160791172,3	MCF-7	breast:
2	chr3:160739507..160741947-chr3:160747617..160749551,2	MCF-7	breast:
3	chr3:160746769..160748964-chr3:160821024..160822898,2	MCF-7	breast:
4	chr3:160748438..160750159-chr3:160785119..160786787,2	MCF-7	breast:
5	chr3:160747461..160750414-chr3:161128370..161130411,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169255	Chromatin interaction
ENSG00000169251	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12632514	1.00[EUR][1000 genomes]
rs12634108	1.00[EUR][1000 genomes]
rs12635895	1.00[EUR][1000 genomes]
rs12636473	1.00[EUR][1000 genomes]
rs13313977	1.00[EUR][1000 genomes]
rs16831667	1.00[EUR][1000 genomes]
rs16831679	1.00[EUR][1000 genomes]
rs34868645	1.00[EUR][1000 genomes]
rs56378191	1.00[EUR][1000 genomes]
rs57649180	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58013864	1.00[EUR][1000 genomes]
rs58404146	1.00[EUR][1000 genomes]
rs61560039	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61631170	1.00[EUR][1000 genomes]
rs61693724	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6766476	1.00[EUR][1000 genomes]
rs6773475	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6774622	1.00[EUR][1000 genomes]
rs6784487	1.00[EUR][1000 genomes]
rs6790257	1.00[EUR][1000 genomes]
rs6794409	1.00[EUR][1000 genomes]
rs6802169	1.00[EUR][1000 genomes]
rs6802417	1.00[EUR][1000 genomes]
rs6807237	1.00[EUR][1000 genomes]
rs9852671	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160745200-160748800	Weak transcription	Placenta	Placenta
2	chr3:160745200-160782600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:160746600-160749000	Weak transcription	Psoas Muscle	Psoas
4	chr3:160748200-160749400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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