Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13313977	1.00[EUR][1000 genomes]
rs16831667	1.00[EUR][1000 genomes]
rs16831679	1.00[EUR][1000 genomes]
rs57649180	1.00[EUR][1000 genomes]
rs57802907	1.00[AMR][1000 genomes]
rs61560039	1.00[EUR][1000 genomes]
rs61693724	1.00[EUR][1000 genomes]
rs6773475	1.00[EUR][1000 genomes]
rs6774622	1.00[EUR][1000 genomes]
rs6775181	1.00[AMR][1000 genomes]
rs6784487	1.00[EUR][1000 genomes]
rs6790257	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6791115	1.00[MEX][hapmap]
rs6794409	1.00[EUR][1000 genomes]
rs6796990	1.00[EUR][1000 genomes]
rs6802169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6802417	1.00[EUR][1000 genomes]
rs6807237	1.00[EUR][1000 genomes]
rs73875444	1.00[EUR][1000 genomes]
rs9852671	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv32963	chr3:160555238-160603116	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160558400-160565400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:160560200-160563800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:160560400-160566400	Weak transcription	Psoas Muscle	Psoas
4	chr3:160560800-160565200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:160561200-160565400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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