Variant report

Variant	rs61693724
Chromosome Location	chr3:160735705-160735706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12632514	1.00[EUR][1000 genomes]
rs12634108	1.00[EUR][1000 genomes]
rs12636473	1.00[EUR][1000 genomes]
rs13313977	1.00[EUR][1000 genomes]
rs16831667	1.00[EUR][1000 genomes]
rs16831679	1.00[EUR][1000 genomes]
rs34868645	1.00[EUR][1000 genomes]
rs56378191	1.00[EUR][1000 genomes]
rs57649180	1.00[EUR][1000 genomes]
rs58013864	1.00[EUR][1000 genomes]
rs58404146	1.00[EUR][1000 genomes]
rs61560039	1.00[EUR][1000 genomes]
rs61631170	1.00[EUR][1000 genomes]
rs6766476	1.00[EUR][1000 genomes]
rs6773475	1.00[EUR][1000 genomes]
rs6774622	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6784487	1.00[EUR][1000 genomes]
rs6790257	1.00[EUR][1000 genomes]
rs6794409	1.00[EUR][1000 genomes]
rs6802169	1.00[EUR][1000 genomes]
rs6802417	1.00[EUR][1000 genomes]
rs6807237	1.00[EUR][1000 genomes]
rs73875444	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9852671	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160732800-160745000	Weak transcription	Psoas Muscle	Psoas
2	chr3:160733400-160736600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:160733600-160746000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:160733800-160737000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:160734200-160735800	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:160735000-160735800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:160735200-160736800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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