Variant report

Variant	rs35780444
Chromosome Location	chr3:160802901-160802902
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160800435..160803174-chr3:161089505..161091313,2	MCF-7	breast:
2	chr3:160800516..160803388-chr3:160803581..160805402,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12634108	1.00[AMR][1000 genomes]
rs34244438	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34484892	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35135616	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35221490	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35414882	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35740625	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160780800-160821400	Weak transcription	Fetal Brain Male	brain
2	chr3:160781400-160803400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:160781800-160822000	Weak transcription	Thymus	Thymus
4	chr3:160787000-160822000	Weak transcription	Primary T cells from cord blood	blood
5	chr3:160787200-160818800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:160787600-160803200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:160788200-160803400	Weak transcription	Fetal Brain Female	brain
8	chr3:160788600-160803400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:160788600-160807600	Weak transcription	Pancreas	Pancrea
10	chr3:160788800-160803400	Weak transcription	Adipose Nuclei	Adipose
11	chr3:160789200-160803200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:160789600-160818800	Weak transcription	Esophagus	oesophagus
13	chr3:160792800-160803200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:160796000-160817400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:160796200-160821800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:160796600-160803400	Weak transcription	Fetal Intestine Large	intestine
17	chr3:160797000-160822000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:160797600-160817200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:160798600-160803600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:160798600-160821800	Weak transcription	Brain Angular Gyrus	brain
21	chr3:160798800-160804200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr3:160799200-160804200	Weak transcription	Lung	lung
23	chr3:160799800-160821800	Weak transcription	NHLF	lung
24	chr3:160799800-160822000	Weak transcription	HMEC	breast
25	chr3:160800000-160803000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:160800000-160803400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:160800000-160803400	Weak transcription	Fetal Muscle Leg	muscle
28	chr3:160800000-160803800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:160800200-160804400	Weak transcription	Fetal Thymus	thymus
30	chr3:160800200-160808000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr3:160800200-160818200	Weak transcription	Fetal Intestine Small	intestine
32	chr3:160800200-160820000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr3:160800400-160803200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr3:160800400-160803400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr3:160800400-160803400	Weak transcription	Left Ventricle	heart
36	chr3:160800400-160804000	Weak transcription	Brain Anterior Caudate	brain
37	chr3:160800400-160804200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr3:160800400-160804200	Weak transcription	Fetal Stomach	stomach
39	chr3:160800400-160804400	Weak transcription	Aorta	Aorta
40	chr3:160800400-160804400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr3:160800400-160805400	Weak transcription	Right Ventricle	heart
42	chr3:160800400-160813400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr3:160800400-160817200	Weak transcription	Brain Hippocampus Middle	brain
44	chr3:160800400-160818800	Weak transcription	Gastric	stomach
45	chr3:160800400-160822200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr3:160800400-160822400	Weak transcription	Spleen	Spleen
47	chr3:160800600-160803000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr3:160800600-160803200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:160800600-160803400	Weak transcription	Ovary	ovary
50	chr3:160800600-160804200	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links