Variant report

Variant	rs17486612
Chromosome Location	chr4:165736388-165736389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13139212	0.87[ASN][1000 genomes]
rs17486393	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34601130	0.88[ASN][1000 genomes]
rs35902870	0.89[ASN][1000 genomes]
rs4456920	0.87[ASN][1000 genomes]
rs62353592	0.93[ASN][1000 genomes]
rs62353593	0.85[ASN][1000 genomes]
rs6536866	0.85[ASN][1000 genomes]
rs6536867	0.85[ASN][1000 genomes]
rs6536868	0.85[ASN][1000 genomes]
rs6825336	0.85[ASN][1000 genomes]
rs6825794	0.85[ASN][1000 genomes]
rs7660794	0.90[ASN][1000 genomes]
rs7668136	0.89[ASN][1000 genomes]
rs7674254	0.85[ASN][1000 genomes]
rs7678202	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461821	chr4:165402309-165859951	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv596037	chr4:165402309-165859951	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1019150	chr4:165505585-165907924	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv461822	chr4:165531034-165775547	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv596039	chr4:165531034-165775547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv830139	chr4:165619199-165789066	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1026152	chr4:165622244-166027447	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	nsv537336	chr4:165622244-166027447	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv880428	chr4:165669160-165736388	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv881252	chr4:165733052-165788605	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:165729400-165736600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:165729400-165736800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:165729400-165743800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:165734200-165736400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:165735000-165736600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:165735200-165736600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:165735800-165737400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:165736000-165737200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:165736000-165737600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:165736200-165736400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:165736200-165736800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:165736200-165737000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:165736200-165737200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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