Variant report

Variant	rs17488069
Chromosome Location	chr5:119708712-119708713
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1432452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17146640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17146657	1.00[AMR][1000 genomes]
rs17146672	1.00[AMR][1000 genomes]
rs17421815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17422218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17422615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17422685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17422844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17423226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17423413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17481162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17481204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17488014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17488416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17488458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17488966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17510029	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882786	chr5:119615110-119714817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv527509	chr5:119697716-119724069	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119705600-119714600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:119707800-119709000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:119707800-119709200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:119708600-119709000	Active TSS	Gastric	stomach
5	chr5:119708600-119709400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:119708600-119709400	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links