Variant report

Variant	rs17146657
Chromosome Location	chr5:119810519-119810520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:119808055..119810558-chr5:119818687..119821313,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10213989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10478473	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10519636	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1432452	1.00[AMR][1000 genomes]
rs16766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17146640	1.00[AMR][1000 genomes]
rs17146662	1.00[CHB][hapmap]
rs17146672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17146705	0.85[ASN][1000 genomes]
rs17421815	1.00[AMR][1000 genomes]
rs17422218	1.00[AMR][1000 genomes]
rs17422615	1.00[AMR][1000 genomes]
rs17422685	1.00[AMR][1000 genomes]
rs17422844	1.00[AMR][1000 genomes]
rs17423226	1.00[AMR][1000 genomes]
rs17423413	1.00[AMR][1000 genomes]
rs17481162	1.00[AMR][1000 genomes]
rs17481204	1.00[AMR][1000 genomes]
rs17488014	1.00[AMR][1000 genomes]
rs17488069	1.00[AMR][1000 genomes]
rs17488416	1.00[AMR][1000 genomes]
rs17488458	1.00[AMR][1000 genomes]
rs17488966	1.00[AMR][1000 genomes]
rs17510029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1823926	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1823927	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2601208	1.00[CHB][hapmap]
rs2601209	1.00[JPT][hapmap]
rs2691097	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2691100	1.00[JPT][hapmap]
rs300957	1.00[CHB][hapmap]
rs3991306	0.81[ASN][1000 genomes]
rs6895369	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72786244	0.95[ASN][1000 genomes]
rs72786260	0.81[ASN][1000 genomes]
rs72788222	0.81[ASN][1000 genomes]
rs72788223	0.85[ASN][1000 genomes]
rs72788224	0.85[ASN][1000 genomes]
rs72788231	0.85[ASN][1000 genomes]
rs72788238	0.81[ASN][1000 genomes]
rs7702580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7710004	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7715549	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs921782	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9327145	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9687538	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119803000-119811800	Weak transcription	Fetal Heart	heart
2	chr5:119804400-119812000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:119808600-119835800	Weak transcription	HSMM	muscle
4	chr5:119809000-119814200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:119809400-119814200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:119809800-119810600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:119809800-119816800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:119810000-119811800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:119810000-119814200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:119810000-119814400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:119810400-119812000	Enhancers	Osteobl	bone

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