Variant report

Variant	rs7715549
Chromosome Location	chr5:119806872-119806873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10213989	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10478473	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10519636	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16766	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17146657	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17146662	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1823926	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1823927	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2601208	1.00[CHB][hapmap]
rs2601209	1.00[JPT][hapmap]
rs2691097	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2691100	1.00[JPT][hapmap]
rs300957	1.00[CHB][hapmap]
rs6895369	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72786233	0.81[ASN][1000 genomes]
rs7702580	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7710004	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs921782	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9327145	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7715549	FAM170A	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119801800-119809200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:119802400-119809600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:119802600-119808000	Weak transcription	HSMMtube	muscle
4	chr5:119802600-119808000	Weak transcription	NH-A	brain
5	chr5:119802800-119807400	Weak transcription	NHLF	lung
6	chr5:119802800-119809600	Weak transcription	Aorta	Aorta
7	chr5:119803000-119811800	Weak transcription	Fetal Heart	heart
8	chr5:119803800-119807600	Weak transcription	HSMM	muscle
9	chr5:119803800-119809200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:119804400-119807400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:119804400-119812000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:119804800-119807000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:119804800-119808000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:119806600-119809400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr5:119806800-119808400	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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