Variant report

Variant	rs72786233
Chromosome Location	chr5:119801534-119801535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10050532	0.85[ASN][1000 genomes]
rs7715549	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1018100	chr5:119749898-119802014	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119798800-119801600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr5:119798800-119802800	Active TSS	Aorta	Aorta
3	chr5:119799000-119802200	Active TSS	Right Atrium	heart
4	chr5:119799000-119803600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:119799200-119801800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
6	chr5:119799200-119803000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:119799400-119801600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr5:119799400-119801800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr5:119799400-119802000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr5:119799400-119802000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:119799400-119802000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr5:119799400-119802200	Active TSS	Right Ventricle	heart
13	chr5:119799400-119802400	Active TSS	Brain Angular Gyrus	brain
14	chr5:119799400-119802600	Active TSS	HSMMtube	muscle
15	chr5:119799400-119802600	Active TSS	NHDF-Ad	bronchial
16	chr5:119799400-119803000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:119799600-119801600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:119799600-119801600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr5:119799600-119801600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
20	chr5:119799600-119801800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
21	chr5:119799600-119801800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:119799600-119801800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:119799600-119801800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
24	chr5:119799600-119801800	Active TSS	Psoas Muscle	Psoas
25	chr5:119799600-119802000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:119799600-119802000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
27	chr5:119799600-119802200	Bivalent/Poised TSS	Fetal Lung	lung
28	chr5:119799600-119802200	Active TSS	Left Ventricle	heart
29	chr5:119799600-119802200	Active TSS	Osteobl	bone
30	chr5:119799600-119802600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr5:119799600-119803000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr5:119799800-119801600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr5:119799800-119801600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
34	chr5:119799800-119801600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:119799800-119801600	Active TSS	Fetal Heart	heart
36	chr5:119799800-119801600	Bivalent/Poised TSS	Fetal Stomach	stomach
37	chr5:119799800-119801600	Active TSS	NH-A	brain
38	chr5:119799800-119801800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
39	chr5:119799800-119802000	Bivalent/Poised TSS	Fetal Kidney	kidney
40	chr5:119799800-119802400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr5:119799800-119802400	Active TSS	Muscle Satellite Cultured Cells	--
42	chr5:119799800-119802400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
43	chr5:119799800-119802400	Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr5:119799800-119802600	Active TSS	Brain Anterior Caudate	brain
45	chr5:119799800-119802800	Active TSS	HSMM	muscle
46	chr5:119799800-119802800	Active TSS	NHLF	lung
47	chr5:119799800-119803600	Active TSS	K562	blood
48	chr5:119800000-119801600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
49	chr5:119800000-119801800	Active TSS	Placenta Amnion	Placenta Amnion
50	chr5:119800400-119801600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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