Variant report

Variant	rs921782
Chromosome Location	chr5:119835711-119835712
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:119834205..119836736-chr5:119837818..119840539,3	K562	blood:
2	chr5:119806492..119808449-chr5:119834650..119836281,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10035683	0.81[CEU][hapmap]
rs10052263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10052334	0.82[AMR][1000 genomes]
rs10060164	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10064623	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs10064951	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10065330	0.82[AMR][1000 genomes]
rs10213989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477605	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs10478472	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs10478473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478474	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs10519636	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11949016	0.82[AMR][1000 genomes]
rs13361121	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs1378262	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1454982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16766	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17146657	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17146662	1.00[CHB][hapmap]
rs17146705	0.95[ASN][1000 genomes]
rs1823926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1823927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2601208	1.00[CHB][hapmap]
rs2601209	1.00[JPT][hapmap]
rs2655066	0.81[CEU][hapmap];0.84[ASN][1000 genomes]
rs2691097	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2691100	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs300956	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs300957	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs3991306	1.00[ASN][1000 genomes]
rs4476747	0.82[AMR][1000 genomes]
rs4895261	0.93[CEU][hapmap]
rs6595239	0.81[CEU][hapmap]
rs6865123	0.84[ASN][1000 genomes]
rs6892665	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6895369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72786260	0.91[ASN][1000 genomes]
rs72788222	0.91[ASN][1000 genomes]
rs72788223	0.95[ASN][1000 genomes]
rs72788224	0.95[ASN][1000 genomes]
rs72788231	0.95[ASN][1000 genomes]
rs72788238	0.91[ASN][1000 genomes]
rs7448156	0.81[AMR][1000 genomes]
rs7702580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7706025	0.82[AMR][1000 genomes]
rs7710004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710626	0.81[CEU][hapmap]
rs7710928	0.85[CEU][hapmap]
rs7715549	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7728098	0.82[AMR][1000 genomes]
rs7733602	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9327144	0.82[AMR][1000 genomes]
rs9327145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327146	0.82[AMR][1000 genomes]
rs9687538	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119808600-119835800	Weak transcription	HSMM	muscle
2	chr5:119812200-119840000	Weak transcription	Fetal Lung	lung
3	chr5:119816600-119843000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:119818200-119845600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:119834400-119843600	Weak transcription	HSMMtube	muscle
6	chr5:119835000-119835800	Strong transcription	Muscle Satellite Cultured Cells	--
7	chr5:119835400-119835800	Enhancers	Osteobl	bone
8	chr5:119835600-119836000	Enhancers	NHDF-Ad	bronchial
9	chr5:119835600-119836200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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