Variant report

Variant	rs2601208
Chromosome Location	chr5:119809193-119809194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10213989	1.00[CHB][hapmap]
rs10478473	1.00[CHB][hapmap]
rs10519636	1.00[CHB][hapmap]
rs16766	1.00[CHB][hapmap]
rs17146657	1.00[CHB][hapmap]
rs17146662	1.00[CHB][hapmap]
rs17146710	1.00[JPT][hapmap]
rs1823926	1.00[CHB][hapmap]
rs1823927	1.00[CHB][hapmap]
rs1902147	1.00[JPT][hapmap]
rs2601209	0.86[YRI][hapmap]
rs2601210	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs2601211	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs2604163	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs2604165	0.81[AMR][1000 genomes]
rs2655066	0.87[AMR][1000 genomes]
rs2655067	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs2655069	1.00[JPT][hapmap]
rs2691097	1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs2691100	0.91[AMR][1000 genomes]
rs300957	1.00[CHB][hapmap]
rs41357149	1.00[JPT][hapmap]
rs4895261	1.00[JPT][hapmap]
rs6865123	0.91[AMR][1000 genomes]
rs6883068	1.00[JPT][hapmap]
rs6895369	1.00[CHB][hapmap]
rs7702580	1.00[CHB][hapmap]
rs7710004	1.00[CHB][hapmap]
rs7715549	1.00[CHB][hapmap]
rs7733602	1.00[JPT][hapmap]
rs921782	1.00[CHB][hapmap]
rs9327145	1.00[CHB][hapmap]
rs9687538	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119801800-119809200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:119802400-119809600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:119802800-119809600	Weak transcription	Aorta	Aorta
4	chr5:119803000-119811800	Weak transcription	Fetal Heart	heart
5	chr5:119803800-119809200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:119804400-119812000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:119806600-119809400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:119807400-119810000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:119808000-119809200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:119808400-119810400	Weak transcription	Osteobl	bone
11	chr5:119808600-119835800	Weak transcription	HSMM	muscle
12	chr5:119809000-119809800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:119809000-119814200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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