Variant report

Variant	rs2655069
Chromosome Location	chr5:119814046-119814047
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10035683	0.93[YRI][hapmap]
rs10064623	0.93[YRI][hapmap]
rs10213989	0.93[YRI][hapmap]
rs10477605	0.93[YRI][hapmap]
rs10478472	0.93[YRI][hapmap]
rs10478473	0.93[YRI][hapmap]
rs10478474	0.93[YRI][hapmap]
rs13356306	0.89[AFR][1000 genomes]
rs13359288	0.84[AFR][1000 genomes]
rs13361121	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs1404300	1.00[CHB][hapmap]
rs1454982	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16766	0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs17146672	0.92[ASN][1000 genomes]
rs17146710	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17510029	0.84[ASN][1000 genomes]
rs1823926	0.90[YRI][hapmap]
rs1902147	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2601208	1.00[JPT][hapmap]
rs2601210	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2601211	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2604163	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2604164	0.85[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2604165	0.84[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2655066	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2655067	0.93[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2691097	0.86[CEU][hapmap];0.97[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2691100	0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs300956	0.81[AFR][1000 genomes]
rs41357149	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4476747	0.93[YRI][hapmap]
rs4895261	1.00[JPT][hapmap]
rs6595236	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs6595239	0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs6865123	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6871554	0.82[AFR][1000 genomes]
rs6882134	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6883068	1.00[JPT][hapmap]
rs6892665	0.85[ASN][1000 genomes]
rs6895369	0.93[YRI][hapmap]
rs7448156	0.88[AFR][1000 genomes]
rs7702580	0.81[YRI][hapmap]
rs7706025	0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs7710004	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs7710626	0.80[AFR][1000 genomes]
rs7710848	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs7710928	1.00[CHB][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs7712847	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7733602	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9327144	0.93[YRI][hapmap]
rs9327145	0.93[YRI][hapmap]
rs9327146	0.90[YRI][hapmap]
rs9687538	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119808600-119835800	Weak transcription	HSMM	muscle
2	chr5:119809000-119814200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:119809400-119814200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:119809800-119816800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:119810000-119814200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:119810000-119814400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:119812000-119814200	Weak transcription	Osteobl	bone
8	chr5:119812000-119826800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:119812200-119814800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:119812200-119840000	Weak transcription	Fetal Lung	lung
11	chr5:119812400-119814200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:119813200-119815200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:119813600-119814800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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