The 2.0 version of rSNPBase

Variant report

Variant rs17491085
Chromosome Location chr5:145323217-145323218
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145317400-145323400 Weak transcription HSMM muscle
2 chr5:145317600-145323600 Transcr. at gene 5' and 3' NHEK skin
3 chr5:145317600-145325400 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr5:145317800-145323400 Weak transcription Aorta Aorta
5 chr5:145317800-145328600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr5:145318600-145323800 Enhancers Liver Liver
7 chr5:145319000-145325400 Weak transcription Left Ventricle heart
8 chr5:145319400-145328800 Weak transcription HUES64 Cell Line embryonic stem cell
9 chr5:145319400-145330200 Enhancers Stomach Mucosa stomach
10 chr5:145319600-145325400 Enhancers Fetal Intestine Small intestine
11 chr5:145319600-145325400 Weak transcription Placenta Amnion Placenta Amnion
12 chr5:145319600-145325600 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr5:145319800-145326000 Weak transcription ES-WA7 Cell Line embryonic stem cell
14 chr5:145319800-145326400 Weak transcription Small Intestine intestine
15 chr5:145319800-145328800 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr5:145319800-145366000 Weak transcription Fetal Stomach stomach
17 chr5:145320000-145325000 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr5:145320000-145325200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr5:145320000-145325200 Weak transcription HUES6 Cell Line embryonic stem cell
20 chr5:145320200-145325200 Weak transcription Gastric stomach
21 chr5:145320200-145327200 Enhancers Fetal Intestine Large intestine
22 chr5:145320200-145329600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
23 chr5:145320400-145327400 Enhancers Skeletal Muscle Female skeletal muscle
24 chr5:145320800-145324200 Enhancers Primary neutrophils fromperipheralblood blood
25 chr5:145321400-145325400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr5:145321600-145324200 Enhancers Duodenum Mucosa Duodenum
27 chr5:145321600-145324800 Genic enhancers HMEC breast
28 chr5:145321800-145325000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr5:145322000-145325400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr5:145322000-145325400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr5:145322000-145325400 Weak transcription Brain Anterior Caudate brain
32 chr5:145322000-145325400 Weak transcription Osteobl bone
33 chr5:145322200-145323400 Weak transcription NH-A brain
34 chr5:145322200-145324000 Weak transcription Psoas Muscle Psoas
35 chr5:145322200-145325200 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr5:145322200-145325200 Weak transcription Esophagus oesophagus
37 chr5:145322200-145325200 Weak transcription Pancreas Pancrea
38 chr5:145322400-145327000 Enhancers Rectal Mucosa Donor 31 rectum
39 chr5:145322400-145337800 Weak transcription Colonic Mucosa Colon
40 chr5:145322600-145327400 Enhancers HepG2 liver
41 chr5:145322600-145330000 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr5:145322800-145323800 Enhancers Primary T regulatory cells fromperipheralblood blood
43 chr5:145323000-145323400 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
44 chr5:145323000-145323600 Bivalent Enhancer Monocytes-CD14+_RO01746 blood
45 chr5:145323000-145324200 Enhancers Rectal Mucosa Donor 29 rectum
46 chr5:145323000-145325600 Enhancers A549 lung
47 chr5:145323200-145323600 Enhancers Primary monocytes fromperipheralblood blood
48 chr5:145323200-145323800 Flanking Active TSS Hela-S3 cervix
49 chr5:145323200-145324800 Enhancers Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015