Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10500505	0.90[EUR][1000 genomes]
rs11075558	0.90[EUR][1000 genomes]
rs11075559	0.90[EUR][1000 genomes]
rs12596107	0.90[EUR][1000 genomes]
rs12599626	0.89[EUR][1000 genomes]
rs13334375	0.89[EUR][1000 genomes]
rs1390641	0.90[EUR][1000 genomes]
rs1496397	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1520238	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16956488	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16968172	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1896754	0.90[EUR][1000 genomes]
rs2195431	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs57879848	0.95[EUR][1000 genomes]
rs58245127	0.95[EUR][1000 genomes]
rs59208924	0.81[ASN][1000 genomes]
rs62042160	1.00[AFR][1000 genomes]
rs62042187	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7184863	0.93[EUR][1000 genomes]
rs72790858	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv572901	chr16:64964233-64990187	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17500088	CES8	cis	cerebellum	SCAN
rs17500088	CCDC79	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64967800-64981600	Weak transcription	Fetal Stomach	stomach
2	chr16:64968600-64978400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr16:64975000-64980200	Weak transcription	NH-A	brain
4	chr16:64975400-64980800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr16:64975600-64979000	Weak transcription	HSMM	muscle
6	chr16:64976000-64980600	Weak transcription	NHDF-Ad	bronchial
7	chr16:64976400-64981000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr16:64977000-64979400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr16:64977200-64978800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr16:64977200-64979600	Weak transcription	Osteobl	bone
11	chr16:64977400-64981400	Weak transcription	Fetal Muscle Leg	muscle
12	chr16:64977800-64978000	Enhancers	Ovary	ovary
13	chr16:64977800-64981600	Weak transcription	HUVEC	blood vessel

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