Variant report

Variant	rs62042160
Chromosome Location	chr16:64927821-64927822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10500505	0.83[AMR][1000 genomes]
rs10852419	0.87[EUR][1000 genomes]
rs11075558	0.82[AMR][1000 genomes]
rs11075559	0.83[AMR][1000 genomes]
rs12596107	0.83[AMR][1000 genomes]
rs12599626	0.83[AMR][1000 genomes]
rs13334375	0.83[AMR][1000 genomes]
rs1390641	0.83[AMR][1000 genomes]
rs1476125	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16968001	0.88[EUR][1000 genomes]
rs17500088	1.00[AFR][1000 genomes]
rs1896754	0.83[AMR][1000 genomes]
rs72790858	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv457512	chr16:64887354-64935433	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv572900	chr16:64887354-64935433	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64900800-64934400	Weak transcription	Fetal Brain Male	brain
2	chr16:64926400-64931200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr16:64927000-64928600	Enhancers	HSMMtube	muscle
4	chr16:64927600-64929800	Weak transcription	Fetal Lung	lung
5	chr16:64927800-64928000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr16:64927800-64928600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr16:64927800-64929800	Weak transcription	Fetal Kidney	kidney
8	chr16:64927800-64931200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr16:64927800-64934200	Weak transcription	NHDF-Ad	bronchial
10	chr16:64927800-64941800	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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