Variant report

Variant	rs16968001
Chromosome Location	chr16:64931166-64931167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16956488	0.81[CEU][hapmap]
rs17500088	0.81[CEU][hapmap]
rs62042160	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv457512	chr16:64887354-64935433	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv572900	chr16:64887354-64935433	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16968001	CCDC79	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64900800-64934400	Weak transcription	Fetal Brain Male	brain
2	chr16:64926400-64931200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr16:64927800-64931200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr16:64927800-64934200	Weak transcription	NHDF-Ad	bronchial
5	chr16:64927800-64941800	Weak transcription	Osteobl	bone
6	chr16:64928000-64931800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr16:64928600-64932000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr16:64929800-64931200	Enhancers	Fetal Stomach	stomach
9	chr16:64929800-64931400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr16:64930200-64934200	Weak transcription	Fetal Kidney	kidney
11	chr16:64930400-64931200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr16:64930400-64933000	Weak transcription	Fetal Lung	lung
13	chr16:64930600-64931400	Enhancers	Spleen	Spleen

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links