Variant report

Variant	rs17500476
Chromosome Location	chr3:84677265-84677266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1580448	0.86[EUR][1000 genomes]
rs1905846	0.84[ASN][1000 genomes]
rs56985130	0.86[EUR][1000 genomes]
rs62254217	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62254685	0.83[EUR][1000 genomes]
rs62254689	0.83[EUR][1000 genomes]
rs62254714	0.86[EUR][1000 genomes]
rs62254715	0.86[EUR][1000 genomes]
rs6782948	0.87[EUR][1000 genomes]
rs72907319	0.86[ASN][1000 genomes]
rs72907321	0.86[ASN][1000 genomes]
rs73127115	0.86[EUR][1000 genomes]
rs901134	0.82[EUR][1000 genomes]
rs974534	0.95[EUR][1000 genomes]
rs974535	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9837600	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760745	chr3:84208364-84783259	Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998578	chr3:84521514-84773582	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv536615	chr3:84521514-84773582	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv460745	chr3:84644186-84779079	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv590851	chr3:84644186-84779079	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv1014928	chr3:84653836-84773582	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv536616	chr3:84653836-84773582	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:84677000-84677800	Active TSS	Brain Substantia Nigra	brain
2	chr3:84677000-84678200	Active TSS	Brain Hippocampus Middle	brain
3	chr3:84677200-84677800	Active TSS	Brain Anterior Caudate	brain
4	chr3:84677200-84677800	Active TSS	Brain Cingulate Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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