Variant report

Variant	rs974535
Chromosome Location	chr3:84648671-84648672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12488651	0.93[ASN][1000 genomes]
rs1473461	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1580448	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17492563	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17500476	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1905846	0.98[ASN][1000 genomes]
rs56985130	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59551717	0.88[ASN][1000 genomes]
rs59671531	0.89[ASN][1000 genomes]
rs62254217	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62254685	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62254689	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62254714	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62254715	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6781297	0.93[ASN][1000 genomes]
rs6782948	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73127115	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9309944	0.89[ASN][1000 genomes]
rs974534	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9837600	0.99[ASN][1000 genomes]
rs9839147	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007008	chr3:84069044-84653896	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv536612	chr3:84069044-84653896	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2760745	chr3:84208364-84783259	Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv998578	chr3:84521514-84773582	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv536615	chr3:84521514-84773582	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv460745	chr3:84644186-84779079	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv590851	chr3:84644186-84779079	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:84647800-84650400	Weak transcription	H9 Cell Line	embryonic stem cell

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