Variant report

Variant rs17500654
Chromosome Location chr7:27162759-27162760
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:27145800-27162800 Strong transcription Primary hematopoietic stem cells short term culture blood
2 chr7:27146400-27169600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr7:27152800-27169400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
4 chr7:27155200-27163600 Weak transcription NHDF-Ad bronchial
5 chr7:27155600-27169400 Weak transcription Hela-S3 cervix
6 chr7:27156200-27169200 Weak transcription Osteobl bone
7 chr7:27159400-27163400 Weak transcription Spleen Spleen
8 chr7:27159800-27162800 Active TSS Breast Myoepithelial Primary Cells Breast
9 chr7:27160200-27163200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr7:27160200-27163800 Flanking Active TSS HUVEC blood vessel
11 chr7:27160400-27164400 Transcr. at gene 5' and 3' Fetal Stomach stomach
12 chr7:27160800-27163200 Active TSS Rectal Smooth Muscle rectum
13 chr7:27161000-27162800 Active TSS Stomach Smooth Muscle stomach
14 chr7:27161000-27164200 Flanking Active TSS HMEC breast
15 chr7:27161000-27165200 Weak transcription Psoas Muscle Psoas
16 chr7:27161200-27164000 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr7:27161200-27165400 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr7:27161200-27165600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr7:27161200-27166600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr7:27161400-27162800 Active TSS Duodenum Mucosa Duodenum
21 chr7:27161400-27163000 Active TSS Fetal Intestine Large intestine
22 chr7:27161400-27163400 Active TSS A549 lung
23 chr7:27161400-27164000 Active TSS Fetal Kidney kidney
24 chr7:27161400-27164600 Active TSS Duodenum Smooth Muscle Duodenum
25 chr7:27161600-27162800 Active TSS Stomach Mucosa stomach
26 chr7:27161600-27163200 Active TSS Fetal Thymus thymus
27 chr7:27161600-27163200 Bivalent/Poised TSS HepG2 liver
28 chr7:27161600-27163600 Flanking Bivalent TSS/Enh Fetal Lung lung
29 chr7:27161600-27164000 Flanking Active TSS Rectal Mucosa Donor 31 rectum
30 chr7:27161600-27164200 Active TSS Esophagus oesophagus
31 chr7:27161600-27164400 Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr7:27161600-27164600 Transcr. at gene 5' and 3' Fetal Intestine Small intestine
33 chr7:27161600-27166200 Genic enhancers Fetal Muscle Leg muscle
34 chr7:27161800-27162800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
35 chr7:27161800-27162800 Strong transcription Adipose Nuclei Adipose
36 chr7:27161800-27162800 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr7:27161800-27164000 Weak transcription Small Intestine intestine
38 chr7:27161800-27164400 Bivalent Enhancer ES-UCSF4 Cell Line embryonic stem cell
39 chr7:27161800-27164600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr7:27161800-27164800 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
41 chr7:27162000-27163400 Bivalent Enhancer iPS-18 Cell Line embryonic stem cell
42 chr7:27162000-27163600 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
43 chr7:27162000-27163800 Flanking Active TSS NHLF lung
44 chr7:27162000-27164200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr7:27162200-27162800 Bivalent Enhancer HUES6 Cell Line embryonic stem cell
46 chr7:27162200-27163000 Bivalent Enhancer H1 Cell Line embryonic stem cell
47 chr7:27162200-27164200 Bivalent Enhancer iPS DF 19.11 Cell Line embryonic stem cell
48 chr7:27162200-27164200 Bivalent Enhancer Foreskin Melanocyte Primary Cells skin01 Skin
49 chr7:27162200-27169000 Weak transcription NHEK skin
50 chr7:27162400-27162800 Bivalent Enhancer HUES64 Cell Line embryonic stem cell

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