Variant report

Variant rs17500842
Chromosome Location chr7:27179689-27179690
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:27171200-27181400 Weak transcription Esophagus oesophagus
2 chr7:27175800-27184800 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
3 chr7:27176600-27180800 Weak transcription HepG2 liver
4 chr7:27177000-27180200 Active TSS Fetal Intestine Large intestine
5 chr7:27177200-27181400 Weak transcription Psoas Muscle Psoas
6 chr7:27177600-27183200 Active TSS Rectal Mucosa Donor 29 rectum
7 chr7:27177600-27184400 Active TSS Duodenum Smooth Muscle Duodenum
8 chr7:27177800-27180200 Active TSS Breast Myoepithelial Primary Cells Breast
9 chr7:27177800-27180400 Weak transcription Skeletal Muscle Female skeletal muscle
10 chr7:27177800-27181800 Flanking Active TSS HUVEC blood vessel
11 chr7:27178200-27180400 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr7:27178200-27180800 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr7:27178200-27181400 Active TSS Colonic Mucosa Colon
14 chr7:27178400-27179800 Active TSS Sigmoid Colon Sigmoid Colon
15 chr7:27178400-27180200 Active TSS Rectal Mucosa Donor 31 rectum
16 chr7:27178400-27180400 Active TSS Rectal Smooth Muscle rectum
17 chr7:27178400-27181200 Weak transcription A549 lung
18 chr7:27178600-27179800 Bivalent Enhancer ES-UCSF4 Cell Line embryonic stem cell
19 chr7:27178600-27180000 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr7:27178600-27180000 Active TSS NHEK skin
21 chr7:27178600-27183000 Transcr. at gene 5' and 3' IMR90 fetal lung fibroblasts Cell Line lung
22 chr7:27178800-27179800 Bivalent Enhancer Cortex derived primary cultured neurospheres brain
23 chr7:27178800-27179800 Active TSS Small Intestine intestine
24 chr7:27178800-27180000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr7:27178800-27180400 Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr7:27178800-27181200 Strong transcription NHDF-Ad bronchial
27 chr7:27179000-27179800 Flanking Bivalent TSS/Enh Foreskin Fibroblast Primary Cells skin01 Skin
28 chr7:27179000-27180000 Bivalent Enhancer Foreskin Melanocyte Primary Cells skin01 Skin
29 chr7:27179000-27180200 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
30 chr7:27179000-27181400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr7:27179000-27183400 Active TSS Lung lung
32 chr7:27179200-27179800 Active TSS HMEC breast
33 chr7:27179200-27180000 Active TSS Fetal Intestine Small intestine
34 chr7:27179200-27180200 Strong transcription Primary hematopoietic stem cells short term culture blood
35 chr7:27179200-27181000 Strong transcription Primary hematopoietic stem cells blood
36 chr7:27179200-27181000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr7:27179200-27182200 Weak transcription Spleen Spleen
38 chr7:27179200-27183200 Weak transcription Dnd41 blood
39 chr7:27179400-27180000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr7:27179400-27180200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr7:27179400-27180400 Transcr. at gene 5' and 3' Fetal Muscle Trunk muscle
42 chr7:27179400-27181000 Genic enhancers Colon Smooth Muscle Colon
43 chr7:27179400-27181800 Strong transcription Muscle Satellite Cultured Cells --
44 chr7:27179400-27183200 Transcr. at gene 5' and 3' Fetal Lung lung
45 chr7:27179600-27179800 Bivalent Enhancer H9 Derived Neuron Cultured Cells ES cell derived
46 chr7:27179600-27179800 Bivalent Enhancer iPS-18 Cell Line embryonic stem cell
47 chr7:27179600-27179800 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr7:27179600-27179800 Flanking Bivalent TSS/Enh Ganglion Eminence derived primary cultured neurospheres brain
49 chr7:27179600-27179800 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin02 Skin
50 chr7:27179600-27179800 Flanking Active TSS Fetal Adrenal Gland Adrenal Gland

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