Variant report

Variant	rs17499826
Chromosome Location	chr7:27004047-27004048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11564058	1.00[AMR][1000 genomes]
rs17436215	1.00[AMR][1000 genomes]
rs17437202	1.00[AMR][1000 genomes]
rs17471821	1.00[AMR][1000 genomes]
rs17472028	1.00[YRI][hapmap]
rs17499798	0.83[AFR][1000 genomes]
rs17500264	1.00[AFR][1000 genomes]
rs17500785	1.00[YRI][hapmap]
rs17500842	1.00[AMR][1000 genomes]
rs73288595	1.00[AMR][1000 genomes]
rs73288596	1.00[AMR][1000 genomes]
rs73288599	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1033272	chr7:26976426-27020206	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27000000-27004200	Weak transcription	HepG2	liver
2	chr7:27003000-27004400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:27003200-27004400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:27003200-27004600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr7:27003600-27004400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:27003600-27004400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr7:27003600-27004400	Enhancers	Adipose Nuclei	Adipose
8	chr7:27003600-27004400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr7:27003800-27004400	Enhancers	Fetal Lung	lung
10	chr7:27003800-27004800	Enhancers	Primary hematopoietic stem cells	blood
11	chr7:27003800-27005000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr7:27004000-27004200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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