Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11722113	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11725615	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728545	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11729687	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734787	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735345	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374277	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374394	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046894	0.92[EUR][1000 genomes]
rs17046897	0.92[EUR][1000 genomes]
rs17503811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503957	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17504041	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588175	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17588244	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17588258	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17588412	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689444	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72689451	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689452	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689459	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689461	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689462	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689471	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166545200-166555200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:166545800-166551800	Weak transcription	HMEC	breast
3	chr4:166546200-166552000	Weak transcription	NHEK	skin
4	chr4:166546400-166552000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:166546600-166551800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:166546800-166552000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:166547400-166551800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:166547600-166552000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:166549000-166553200	Weak transcription	Psoas Muscle	Psoas

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