Variant report

Variant	rs17588258
Chromosome Location	chr4:166548982-166548983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10222891	0.83[EUR][1000 genomes]
rs10222892	0.85[EUR][1000 genomes]
rs10517854	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11722113	0.80[AMR][1000 genomes]
rs11725615	0.80[AMR][1000 genomes]
rs11728545	0.80[AMR][1000 genomes]
rs11734787	0.80[AMR][1000 genomes]
rs11735345	0.80[AMR][1000 genomes]
rs12374277	0.80[AMR][1000 genomes]
rs12374394	0.80[AMR][1000 genomes]
rs1459510	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1459511	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17046824	0.86[EUR][1000 genomes]
rs17046826	0.86[EUR][1000 genomes]
rs17046827	0.86[EUR][1000 genomes]
rs17046894	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17046897	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17503409	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17503436	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17503589	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17503652	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17503798	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17503811	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17503957	0.80[AMR][1000 genomes]
rs17504041	0.80[AMR][1000 genomes]
rs17587847	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17587875	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17587980	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17588001	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17588022	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17588043	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17588175	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17588244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17588412	0.80[AMR][1000 genomes]
rs17632054	0.84[EUR][1000 genomes]
rs28493919	0.86[EUR][1000 genomes]
rs28537958	0.86[EUR][1000 genomes]
rs28569800	0.86[EUR][1000 genomes]
rs28581927	0.86[EUR][1000 genomes]
rs28630955	0.86[EUR][1000 genomes]
rs4543072	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689403	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689404	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689405	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689406	0.85[EUR][1000 genomes]
rs72689409	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689410	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689413	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689414	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689415	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689416	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689419	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689420	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689422	0.82[EUR][1000 genomes]
rs72689423	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689424	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689425	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689427	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689428	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72689439	0.84[EUR][1000 genomes]
rs72689440	0.84[EUR][1000 genomes]
rs72689441	0.84[EUR][1000 genomes]
rs72689442	0.84[EUR][1000 genomes]
rs72689444	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72689451	0.92[EUR][1000 genomes]
rs72689452	0.92[EUR][1000 genomes]
rs72689459	0.80[AMR][1000 genomes]
rs72689461	0.80[AMR][1000 genomes]
rs72689462	0.80[AMR][1000 genomes]
rs72689471	0.80[AMR][1000 genomes]
rs72705441	0.82[AMR][1000 genomes]
rs72705451	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72705452	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72705454	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72705456	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72705458	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72705460	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9996760	0.86[EUR][1000 genomes]
rs9999778	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166545200-166555200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:166545800-166551800	Weak transcription	HMEC	breast
3	chr4:166546200-166552000	Weak transcription	NHEK	skin
4	chr4:166546400-166552000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:166546600-166551800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:166546800-166552000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:166547400-166551800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:166547600-166552000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:166548600-166549000	Active TSS	Placenta	Placenta
10	chr4:166548800-166549000	Enhancers	Psoas Muscle	Psoas

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