Variant report

Variant	rs28569800
Chromosome Location	chr4:166521659-166521660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10001116	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10001551	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10003429	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10006198	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10015768	1.00[AFR][1000 genomes]
rs10016057	1.00[AFR][1000 genomes]
rs10018347	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018834	1.00[AFR][1000 genomes]
rs10019085	1.00[AFR][1000 genomes]
rs10019497	1.00[AFR][1000 genomes]
rs10022417	0.97[AFR][1000 genomes]
rs10022507	0.97[AFR][1000 genomes]
rs10027931	1.00[AFR][1000 genomes]
rs10034270	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10517852	1.00[ASN][1000 genomes]
rs10517854	1.00[EUR][1000 genomes]
rs12331357	0.81[AMR][1000 genomes]
rs13134998	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1380353	1.00[AFR][1000 genomes]
rs1459510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1459511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046758	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046824	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046825	0.97[AFR][1000 genomes]
rs17046826	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046827	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046831	1.00[AFR][1000 genomes]
rs17046853	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17046894	0.86[EUR][1000 genomes]
rs17046897	0.86[EUR][1000 genomes]
rs17503409	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503436	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587826	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587875	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587980	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588001	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588022	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588043	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588175	0.98[EUR][1000 genomes]
rs17588244	0.86[EUR][1000 genomes]
rs17588258	0.86[EUR][1000 genomes]
rs17632054	0.97[EUR][1000 genomes]
rs1914845	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2322119	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366377	0.80[EUR][1000 genomes]
rs28493919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28537958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28539373	1.00[AFR][1000 genomes]
rs28581927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28630765	0.97[AFR][1000 genomes]
rs28630955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654153	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28673221	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4543072	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690822	0.80[EUR][1000 genomes]
rs59204772	0.91[EUR][1000 genomes]
rs6536921	1.00[ASN][1000 genomes]
rs6837884	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6854166	0.91[EUR][1000 genomes]
rs72689403	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689405	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689406	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689409	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689416	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689420	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689422	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689423	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689425	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689428	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689439	0.97[EUR][1000 genomes]
rs72689440	0.97[EUR][1000 genomes]
rs72689441	0.97[EUR][1000 genomes]
rs72689442	0.97[EUR][1000 genomes]
rs72689444	0.88[EUR][1000 genomes]
rs72705441	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705449	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705451	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72705452	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705454	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705458	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705460	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308109	0.91[EUR][1000 genomes]
rs9993351	1.00[AFR][1000 genomes]
rs9996760	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999778	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166503000-166523800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166520000-166524400	Weak transcription	Pancreas	Pancrea
3	chr4:166521200-166525600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:166521400-166523600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:166521400-166524400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:166521600-166522200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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