Variant report
| Variant | rs12331357 |
|---|---|
| Chromosome Location | chr4:166497693-166497694 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10001116 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10001551 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10003429 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10006198 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10018347 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10517852 | 0.94[EUR][1000 genomes] |
| rs17046758 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17046824 | 0.81[AMR][1000 genomes] |
| rs17046826 | 0.81[AMR][1000 genomes] |
| rs17046827 | 0.81[AMR][1000 genomes] |
| rs17587826 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs28366377 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs28493919 | 0.81[AMR][1000 genomes] |
| rs28537958 | 0.81[AMR][1000 genomes] |
| rs28569800 | 0.81[AMR][1000 genomes] |
| rs28581927 | 0.81[AMR][1000 genomes] |
| rs28630955 | 0.81[AMR][1000 genomes] |
| rs28654153 | 0.85[EUR][1000 genomes] |
| rs28673221 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6536921 | 0.87[EUR][1000 genomes] |
| rs72705441 | 0.85[EUR][1000 genomes] |
| rs72705449 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs73861094 | 0.84[ASN][1000 genomes] |
| rs73861096 | 0.82[ASN][1000 genomes] |
| rs73861097 | 0.82[ASN][1000 genomes] |
| rs73863214 | 0.82[ASN][1000 genomes] |
| rs73863218 | 0.82[ASN][1000 genomes] |
| rs73863219 | 0.82[ASN][1000 genomes] |
| rs73863220 | 0.82[ASN][1000 genomes] |
| rs73863221 | 0.82[ASN][1000 genomes] |
| rs73863222 | 0.82[ASN][1000 genomes] |
| rs73863223 | 0.82[ASN][1000 genomes] |
| rs7438657 | 0.82[ASN][1000 genomes] |
| rs9999778 | 0.81[AMR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:166489000-166500800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr4:166494800-166500600 | Weak transcription | HMEC | breast |
