Variant report

Variant	rs10001116
Chromosome Location	chr4:166504291-166504292
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10001551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10003429	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10006198	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019450	0.82[AFR][1000 genomes]
rs10022357	0.82[AFR][1000 genomes]
rs10023210	0.98[AFR][1000 genomes]
rs10034270	0.83[EUR][1000 genomes]
rs10212735	0.82[AFR][1000 genomes]
rs10517852	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10517853	0.80[EUR][1000 genomes]
rs10517854	0.92[EUR][1000 genomes]
rs12331357	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13134998	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1380354	0.82[AFR][1000 genomes]
rs1459510	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1459511	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046758	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046824	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046826	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046827	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046830	0.82[AFR][1000 genomes]
rs17046853	0.83[EUR][1000 genomes]
rs17046855	0.80[AFR][1000 genomes]
rs17503409	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503436	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503589	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503652	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587826	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587847	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587875	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587980	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588001	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588022	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588043	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588175	0.90[EUR][1000 genomes]
rs17632054	0.89[EUR][1000 genomes]
rs1914842	0.88[AFR][1000 genomes]
rs1914845	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996567	0.85[EUR][1000 genomes]
rs2322119	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366377	0.88[EUR][1000 genomes]
rs28372658	0.82[AFR][1000 genomes]
rs28376411	0.95[AFR][1000 genomes]
rs28493919	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28537958	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28569800	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28581927	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589904	1.00[AFR][1000 genomes]
rs28630955	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28647856	0.93[AFR][1000 genomes]
rs28650445	0.98[AFR][1000 genomes]
rs28654153	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28673221	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28725290	0.80[AFR][1000 genomes]
rs28781697	0.82[AFR][1000 genomes]
rs4543072	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59204772	0.83[EUR][1000 genomes]
rs6536921	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837884	0.83[EUR][1000 genomes]
rs6854166	0.83[EUR][1000 genomes]
rs72689403	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689404	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689405	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689406	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689409	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689410	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689413	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689414	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689415	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689416	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689419	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689420	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689422	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689423	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689424	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689425	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689427	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689428	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689439	0.89[EUR][1000 genomes]
rs72689440	0.89[EUR][1000 genomes]
rs72689441	0.89[EUR][1000 genomes]
rs72689442	0.89[EUR][1000 genomes]
rs72689444	0.80[EUR][1000 genomes]
rs72705441	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705449	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705451	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72705452	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705454	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705456	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705458	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705460	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308109	0.83[EUR][1000 genomes]
rs9996760	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999778	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166500600-166504800	Enhancers	HMEC	breast
2	chr4:166502000-166509000	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:166502200-166504600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:166502400-166504600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:166502800-166508600	Weak transcription	Fetal Heart	heart
6	chr4:166503000-166504800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:166503000-166523800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:166503200-166504400	Weak transcription	HUVEC	blood vessel
9	chr4:166503800-166504400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:166504000-166504600	Enhancers	NHEK	skin

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