Variant report

Variant	rs28647856
Chromosome Location	chr4:166518596-166518597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10001116	0.93[AFR][1000 genomes]
rs10001551	0.93[AFR][1000 genomes]
rs10006198	0.94[AFR][1000 genomes]
rs10015768	1.00[AMR][1000 genomes]
rs10016057	1.00[AMR][1000 genomes]
rs10018347	0.93[AFR][1000 genomes]
rs10018834	1.00[AMR][1000 genomes]
rs10019085	1.00[AMR][1000 genomes]
rs10019450	1.00[AMR][1000 genomes]
rs10019497	1.00[AMR][1000 genomes]
rs10022357	1.00[AMR][1000 genomes]
rs10022417	1.00[AMR][1000 genomes]
rs10022507	1.00[AMR][1000 genomes]
rs10023210	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10027931	1.00[AMR][1000 genomes]
rs10030842	1.00[AMR][1000 genomes]
rs10212735	1.00[AMR][1000 genomes]
rs13134998	0.83[AFR][1000 genomes]
rs1380353	1.00[AMR][1000 genomes]
rs1380354	1.00[AMR][1000 genomes]
rs17046825	1.00[AMR][1000 genomes]
rs17046830	1.00[AMR][1000 genomes]
rs17046831	1.00[AMR][1000 genomes]
rs17046855	1.00[AMR][1000 genomes]
rs17587826	0.97[AFR][1000 genomes]
rs1914842	0.82[AFR][1000 genomes]
rs2322119	0.82[AFR][1000 genomes]
rs28372658	1.00[AMR][1000 genomes]
rs28376411	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28539373	1.00[AMR][1000 genomes]
rs28589904	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28630765	1.00[AMR][1000 genomes]
rs28650445	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28673221	0.94[AFR][1000 genomes]
rs28725290	1.00[AMR][1000 genomes]
rs28781697	1.00[AMR][1000 genomes]
rs6536921	0.82[AFR][1000 genomes]
rs72705449	0.88[AFR][1000 genomes]
rs9993351	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166503000-166523800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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