Variant report
| Variant | rs1914842 |
|---|---|
| Chromosome Location | chr4:166511117-166511118 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10001116 | 0.88[AFR][1000 genomes] |
| rs10001551 | 0.88[AFR][1000 genomes] |
| rs10006198 | 0.84[AFR][1000 genomes] |
| rs10018347 | 0.88[AFR][1000 genomes] |
| rs10023210 | 0.90[AFR][1000 genomes] |
| rs1246911 | 1.00[EUR][1000 genomes] |
| rs1246912 | 1.00[EUR][1000 genomes] |
| rs1246915 | 1.00[EUR][1000 genomes] |
| rs1246922 | 1.00[EUR][1000 genomes] |
| rs13134998 | 0.99[AFR][1000 genomes] |
| rs1320223 | 1.00[EUR][1000 genomes] |
| rs17587826 | 0.84[AFR][1000 genomes] |
| rs1914841 | 1.00[EUR][1000 genomes] |
| rs1914843 | 1.00[EUR][1000 genomes] |
| rs1914845 | 0.96[AFR][1000 genomes] |
| rs1996568 | 1.00[EUR][1000 genomes] |
| rs2322119 | 1.00[AFR][1000 genomes] |
| rs2679905 | 1.00[EUR][1000 genomes] |
| rs28376411 | 0.84[AFR][1000 genomes] |
| rs28589904 | 0.88[AFR][1000 genomes] |
| rs28647856 | 0.82[AFR][1000 genomes] |
| rs28650445 | 0.90[AFR][1000 genomes] |
| rs28673221 | 0.84[AFR][1000 genomes] |
| rs355195 | 1.00[CHB][hapmap] |
| rs4091535 | 1.00[EUR][1000 genomes] |
| rs4691207 | 1.00[EUR][1000 genomes] |
| rs6536921 | 0.97[AFR][1000 genomes] |
| rs6855009 | 0.86[EUR][1000 genomes] |
| rs72705449 | 0.93[AFR][1000 genomes] |
| rs7692810 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830141 | chr4:166502908-166689626 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv3387381 | chr4:166510942-166511167 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:166503000-166523800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr4:166510200-166513400 | Weak transcription | Adipose Nuclei | Adipose |
