Variant report

Variant	rs6855009
Chromosome Location	chr4:166518042-166518043
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1246911	0.86[EUR][1000 genomes]
rs1246912	0.86[EUR][1000 genomes]
rs1246915	0.86[EUR][1000 genomes]
rs1246922	0.86[EUR][1000 genomes]
rs1320223	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1914841	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1914842	0.86[EUR][1000 genomes]
rs1914843	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1996568	0.86[EUR][1000 genomes]
rs2679905	0.86[EUR][1000 genomes]
rs4091535	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4691207	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6536923	0.85[AMR][1000 genomes]
rs7692810	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166503000-166523800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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