Variant report

Variant	rs1246912
Chromosome Location	chr4:166521711-166521712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1246909	0.83[AFR][1000 genomes]
rs1246911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1246915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1246922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1320223	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1914841	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1914842	1.00[EUR][1000 genomes]
rs1914843	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1996568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2611207	0.83[AFR][1000 genomes]
rs2611244	0.83[AFR][1000 genomes]
rs2611245	0.83[AFR][1000 genomes]
rs2679905	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2714830	0.83[AFR][1000 genomes]
rs4091535	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4538439	0.83[AFR][1000 genomes]
rs4691207	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6855009	0.86[EUR][1000 genomes]
rs7692810	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166503000-166523800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166520000-166524400	Weak transcription	Pancreas	Pancrea
3	chr4:166521200-166525600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:166521400-166523600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:166521400-166524400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:166521600-166522200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links