Variant report

Variant	rs2611207
Chromosome Location	chr4:166578630-166578631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1246909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1246912	0.83[AFR][1000 genomes]
rs2611213	0.92[AMR][1000 genomes]
rs2611240	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2611243	0.92[AMR][1000 genomes]
rs2611244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2611245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2714830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4234894	0.92[AMR][1000 genomes]
rs4538439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3486584	chr4:166565013-166680227	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3486585	chr4:166565013-166680227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166570000-166584200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166575800-166579000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:166576200-166578800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:166576600-166579200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:166576800-166578800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:166576800-166579000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:166577400-166579000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:166577400-166579600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:166577600-166578800	Enhancers	HUVEC	blood vessel
10	chr4:166578000-166578800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:166578000-166578800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr4:166578000-166579000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr4:166578200-166581800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:166578400-166583600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:166578600-166583600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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