Variant report

Variant	rs13134998
Chromosome Location	chr4:166509271-166509272
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10001116	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10001551	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10003429	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10006198	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018347	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023210	0.89[AFR][1000 genomes]
rs10517852	1.00[ASN][1000 genomes]
rs10517853	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10517854	0.83[EUR][1000 genomes]
rs1459510	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1459511	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046758	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046824	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046826	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046827	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503409	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503436	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503589	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503652	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587826	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587847	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587875	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587980	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588001	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588022	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588043	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588175	0.81[EUR][1000 genomes]
rs17632054	0.80[EUR][1000 genomes]
rs1914842	0.99[AFR][1000 genomes]
rs1914845	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1996567	0.94[EUR][1000 genomes]
rs2322119	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28376411	0.86[AFR][1000 genomes]
rs28493919	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28537958	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28569800	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28581927	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589904	0.90[AFR][1000 genomes]
rs28630955	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28647856	0.83[AFR][1000 genomes]
rs28650445	0.89[AFR][1000 genomes]
rs28654153	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28673221	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4543072	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690822	0.82[EUR][1000 genomes]
rs6536921	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689403	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689404	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689405	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689406	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689409	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689410	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689413	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689414	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689415	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689416	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689419	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689420	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689422	1.00[ASN][1000 genomes]
rs72689423	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689424	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689425	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689427	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689428	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689439	0.80[EUR][1000 genomes]
rs72689440	0.80[EUR][1000 genomes]
rs72689441	0.80[EUR][1000 genomes]
rs72689442	0.80[EUR][1000 genomes]
rs72705441	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705449	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705451	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72705452	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705454	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705456	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705458	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705460	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996760	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999778	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166503000-166523800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166504800-166509600	Weak transcription	HUVEC	blood vessel
3	chr4:166508800-166509600	Weak transcription	Fetal Heart	heart
4	chr4:166509000-166510400	Enhancers	Colon Smooth Muscle	Colon

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