Variant report

Variant	rs72689406
Chromosome Location	chr4:166527697-166527698
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10001116	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10001551	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10003429	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10006198	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018347	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034270	0.89[EUR][1000 genomes]
rs10517852	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10517854	0.98[EUR][1000 genomes]
rs13134998	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1459510	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1459511	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046758	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046824	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046826	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046827	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046853	0.89[EUR][1000 genomes]
rs17046894	0.85[EUR][1000 genomes]
rs17046897	0.85[EUR][1000 genomes]
rs17503409	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503436	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503589	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503652	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587826	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587847	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587875	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587980	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588001	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588022	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588043	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588175	0.97[EUR][1000 genomes]
rs17588244	0.85[EUR][1000 genomes]
rs17588258	0.85[EUR][1000 genomes]
rs17632054	0.95[EUR][1000 genomes]
rs1914845	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2322119	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28493919	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28537958	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28569800	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28581927	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28630955	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654153	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28673221	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4543072	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59204772	0.89[EUR][1000 genomes]
rs6536921	1.00[ASN][1000 genomes]
rs6837884	0.89[EUR][1000 genomes]
rs6854166	0.89[EUR][1000 genomes]
rs72689403	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689404	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689405	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689409	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689410	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689413	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689414	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689415	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689416	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689419	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689420	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689422	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689423	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689424	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689425	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689427	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689428	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689439	0.95[EUR][1000 genomes]
rs72689440	0.95[EUR][1000 genomes]
rs72689441	0.95[EUR][1000 genomes]
rs72689442	0.95[EUR][1000 genomes]
rs72689444	0.86[EUR][1000 genomes]
rs72705441	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705449	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705451	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72705452	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705454	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705456	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705458	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705460	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308109	0.89[EUR][1000 genomes]
rs9996760	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999778	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166525200-166528200	Enhancers	Colon Smooth Muscle	Colon
2	chr4:166525400-166533800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:166525600-166532000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:166525600-166539200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:166526200-166531600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:166527400-166528200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:166527600-166528000	Enhancers	Adipose Nuclei	Adipose

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