Variant report

Variant	rs72689415
Chromosome Location	chr4:166533150-166533151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10001116	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10001551	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10003429	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10006198	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018347	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034270	0.91[EUR][1000 genomes]
rs10517852	1.00[ASN][1000 genomes]
rs10517854	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13134998	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1459510	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1459511	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046758	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046824	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046827	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17046853	0.91[EUR][1000 genomes]
rs17046894	0.86[EUR][1000 genomes]
rs17046897	0.86[EUR][1000 genomes]
rs17503409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503589	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17503652	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587826	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588043	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17588175	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17588244	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17588258	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17632054	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1914845	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2322119	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28366377	0.80[EUR][1000 genomes]
rs28493919	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28537958	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28569800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28581927	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28630955	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654153	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28673221	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4543072	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690822	0.80[EUR][1000 genomes]
rs59204772	0.91[EUR][1000 genomes]
rs6536921	1.00[ASN][1000 genomes]
rs6837884	0.91[EUR][1000 genomes]
rs6854166	0.91[EUR][1000 genomes]
rs72689403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689406	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689413	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689414	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689420	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689422	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689423	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689425	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689427	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689428	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689439	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689440	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689441	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689442	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689444	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72705441	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705449	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705451	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72705452	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72705460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308109	0.91[EUR][1000 genomes]
rs9996760	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9999778	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166525400-166533800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:166525600-166539200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:166530400-166536000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:166530600-166534200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:166530600-166535400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:166530800-166535200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:166531200-166533600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:166531400-166533800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:166531400-166534200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:166531600-166533800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:166531600-166536000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:166531800-166533600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:166532000-166534400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:166532200-166533800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr4:166532200-166534800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:166532400-166533400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:166532400-166533400	Weak transcription	Fetal Kidney	kidney
18	chr4:166532400-166533600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:166532600-166533400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:166532600-166533600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr4:166532600-166533600	Weak transcription	Colon Smooth Muscle	Colon
22	chr4:166532600-166533800	Weak transcription	Adipose Nuclei	Adipose
23	chr4:166532800-166533200	Enhancers	Liver	Liver
24	chr4:166532800-166533400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr4:166532800-166533400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr4:166532800-166533600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:166533000-166533400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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