Variant report
| Variant | rs10517852 |
|---|---|
| Chromosome Location | chr4:166498822-166498823 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:65)
| rs_ID | r2[population] |
|---|---|
| rs10001116 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10001551 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10003429 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10006198 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10018347 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11946342 | 1.00[AFR][1000 genomes] |
| rs12331357 | 0.94[EUR][1000 genomes] |
| rs13134998 | 1.00[ASN][1000 genomes] |
| rs1459510 | 1.00[ASN][1000 genomes] |
| rs1459511 | 1.00[ASN][1000 genomes] |
| rs17046758 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17046824 | 1.00[ASN][1000 genomes] |
| rs17046826 | 1.00[ASN][1000 genomes] |
| rs17046827 | 1.00[ASN][1000 genomes] |
| rs17503409 | 1.00[ASN][1000 genomes] |
| rs17503436 | 1.00[ASN][1000 genomes] |
| rs17503589 | 1.00[ASN][1000 genomes] |
| rs17503652 | 1.00[ASN][1000 genomes] |
| rs17587826 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17587847 | 1.00[ASN][1000 genomes] |
| rs17587875 | 1.00[ASN][1000 genomes] |
| rs17587980 | 1.00[ASN][1000 genomes] |
| rs17588001 | 1.00[ASN][1000 genomes] |
| rs17588022 | 1.00[ASN][1000 genomes] |
| rs17588043 | 1.00[ASN][1000 genomes] |
| rs1914845 | 1.00[ASN][1000 genomes] |
| rs2322119 | 1.00[ASN][1000 genomes] |
| rs28366377 | 0.97[EUR][1000 genomes] |
| rs28493919 | 1.00[ASN][1000 genomes] |
| rs28537958 | 1.00[ASN][1000 genomes] |
| rs28569800 | 1.00[ASN][1000 genomes] |
| rs28581927 | 1.00[ASN][1000 genomes] |
| rs28630955 | 1.00[ASN][1000 genomes] |
| rs28654153 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28673221 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4543072 | 1.00[ASN][1000 genomes] |
| rs6536921 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72689403 | 1.00[ASN][1000 genomes] |
| rs72689404 | 1.00[ASN][1000 genomes] |
| rs72689405 | 1.00[ASN][1000 genomes] |
| rs72689406 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72689409 | 1.00[ASN][1000 genomes] |
| rs72689410 | 1.00[ASN][1000 genomes] |
| rs72689413 | 1.00[ASN][1000 genomes] |
| rs72689414 | 1.00[ASN][1000 genomes] |
| rs72689415 | 1.00[ASN][1000 genomes] |
| rs72689416 | 1.00[ASN][1000 genomes] |
| rs72689419 | 1.00[ASN][1000 genomes] |
| rs72689420 | 1.00[ASN][1000 genomes] |
| rs72689422 | 1.00[ASN][1000 genomes] |
| rs72689423 | 1.00[ASN][1000 genomes] |
| rs72689424 | 1.00[ASN][1000 genomes] |
| rs72689425 | 1.00[ASN][1000 genomes] |
| rs72689427 | 1.00[ASN][1000 genomes] |
| rs72689428 | 1.00[ASN][1000 genomes] |
| rs72705441 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72705449 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72705451 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72705452 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72705454 | 1.00[ASN][1000 genomes] |
| rs72705456 | 1.00[ASN][1000 genomes] |
| rs72705458 | 1.00[ASN][1000 genomes] |
| rs72705460 | 1.00[ASN][1000 genomes] |
| rs9996760 | 1.00[ASN][1000 genomes] |
| rs9999778 | 1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:166489000-166500800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr4:166494800-166500600 | Weak transcription | HMEC | breast |
| 3 | chr4:166497800-166500600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 4 | chr4:166498200-166500800 | Weak transcription | Muscle Satellite Cultured Cells | -- |
