Variant report

Variant	rs72689442
Chromosome Location	chr4:166542444-166542445
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10001116	0.89[EUR][1000 genomes]
rs10001551	0.89[EUR][1000 genomes]
rs10018347	0.89[EUR][1000 genomes]
rs10034270	0.91[EUR][1000 genomes]
rs10517854	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13134998	0.80[EUR][1000 genomes]
rs1459510	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1459511	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17046824	0.97[EUR][1000 genomes]
rs17046826	0.97[EUR][1000 genomes]
rs17046827	0.97[EUR][1000 genomes]
rs17046853	0.91[EUR][1000 genomes]
rs17046894	0.84[EUR][1000 genomes]
rs17046897	0.84[EUR][1000 genomes]
rs17503409	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17503436	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17503589	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17503652	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17587826	0.89[EUR][1000 genomes]
rs17587847	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17587875	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17587980	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17588001	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17588022	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17588043	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17588175	0.95[EUR][1000 genomes]
rs17588244	0.84[EUR][1000 genomes]
rs17588258	0.84[EUR][1000 genomes]
rs17632054	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914845	0.80[EUR][1000 genomes]
rs1996567	0.89[ASN][1000 genomes]
rs2322119	0.80[EUR][1000 genomes]
rs28493919	0.97[EUR][1000 genomes]
rs28537958	0.97[EUR][1000 genomes]
rs28569800	0.97[EUR][1000 genomes]
rs28581927	0.97[EUR][1000 genomes]
rs28630955	0.97[EUR][1000 genomes]
rs28654153	0.89[EUR][1000 genomes]
rs4543072	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4690822	0.80[EUR][1000 genomes]
rs59204772	0.94[EUR][1000 genomes]
rs60426892	0.87[ASN][1000 genomes]
rs6837884	0.91[EUR][1000 genomes]
rs6854166	0.94[EUR][1000 genomes]
rs72689403	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689404	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689405	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689406	0.95[EUR][1000 genomes]
rs72689409	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689410	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689413	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689414	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689415	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689416	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689419	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689420	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689422	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72689423	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689424	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689425	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689427	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689428	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72689439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72689444	0.85[EUR][1000 genomes]
rs72705441	0.89[EUR][1000 genomes]
rs72705449	0.89[EUR][1000 genomes]
rs72705451	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72705452	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72705454	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72705456	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72705458	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72705460	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9308109	0.94[EUR][1000 genomes]
rs9996760	0.97[EUR][1000 genomes]
rs9999778	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166535000-166542600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:166538400-166543000	Weak transcription	HMEC	breast
3	chr4:166539800-166543000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:166542400-166544200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:166542400-166548000	Enhancers	HUVEC	blood vessel

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