Variant report

Variant	rs28650445
Chromosome Location	chr4:166512703-166512704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10001116	0.98[AFR][1000 genomes]
rs10001551	0.98[AFR][1000 genomes]
rs10006198	0.94[AFR][1000 genomes]
rs10015768	1.00[AMR][1000 genomes]
rs10016057	1.00[AMR][1000 genomes]
rs10018347	0.98[AFR][1000 genomes]
rs10018834	1.00[AMR][1000 genomes]
rs10019085	1.00[AMR][1000 genomes]
rs10019450	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019497	1.00[AMR][1000 genomes]
rs10022357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022417	1.00[AMR][1000 genomes]
rs10022507	1.00[AMR][1000 genomes]
rs10023210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10027931	1.00[AMR][1000 genomes]
rs10030842	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10212735	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13134998	0.89[AFR][1000 genomes]
rs1380353	1.00[AMR][1000 genomes]
rs1380354	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17046825	1.00[AMR][1000 genomes]
rs17046830	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17046831	1.00[AMR][1000 genomes]
rs17046855	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17587826	0.94[AFR][1000 genomes]
rs1914842	0.90[AFR][1000 genomes]
rs1914845	0.86[AFR][1000 genomes]
rs2322119	0.90[AFR][1000 genomes]
rs28372658	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28376411	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28537958	0.83[AFR][1000 genomes]
rs28539373	1.00[AMR][1000 genomes]
rs28589904	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28630765	1.00[AMR][1000 genomes]
rs28647856	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28673221	0.94[AFR][1000 genomes]
rs28725290	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28781697	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6536921	0.87[AFR][1000 genomes]
rs72705449	0.97[AFR][1000 genomes]
rs9993351	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166503000-166523800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166510200-166513400	Weak transcription	Adipose Nuclei	Adipose
3	chr4:166512600-166515200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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