Variant report

Variant	rs28630765
Chromosome Location	chr4:166520252-166520253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10015768	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10016057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10018834	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019085	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019450	1.00[AMR][1000 genomes]
rs10019497	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022357	1.00[AMR][1000 genomes]
rs10022417	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022507	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10023210	1.00[AMR][1000 genomes]
rs10027931	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10030842	1.00[AMR][1000 genomes]
rs10212735	1.00[AMR][1000 genomes]
rs1380353	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1380354	1.00[AMR][1000 genomes]
rs17046824	1.00[AFR][1000 genomes]
rs17046825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17046826	1.00[AFR][1000 genomes]
rs17046827	1.00[AFR][1000 genomes]
rs17046830	1.00[AMR][1000 genomes]
rs17046831	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17046855	1.00[AMR][1000 genomes]
rs28372658	1.00[AMR][1000 genomes]
rs28376411	1.00[AMR][1000 genomes]
rs28493919	0.97[AFR][1000 genomes]
rs28539373	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28569800	0.97[AFR][1000 genomes]
rs28581927	0.97[AFR][1000 genomes]
rs28589904	1.00[AMR][1000 genomes]
rs28630955	0.97[AFR][1000 genomes]
rs28647856	1.00[AMR][1000 genomes]
rs28650445	1.00[AMR][1000 genomes]
rs28725290	1.00[AMR][1000 genomes]
rs28781697	1.00[AMR][1000 genomes]
rs9993351	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9996760	0.96[AFR][1000 genomes]
rs9999778	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166503000-166523800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166520000-166524400	Weak transcription	Pancreas	Pancrea

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