Variant report

Variant	rs7438657
Chromosome Location	chr4:166509686-166509687
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10010500	0.93[ASN][1000 genomes]
rs12331357	0.82[ASN][1000 genomes]
rs17046878	0.93[ASN][1000 genomes]
rs28504688	0.93[ASN][1000 genomes]
rs73861094	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73861096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73861097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73863214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73863218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73863219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73863220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73863221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73863222	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73863223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73863224	0.93[ASN][1000 genomes]
rs73863225	0.93[ASN][1000 genomes]
rs73863226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73863227	1.00[AMR][1000 genomes]
rs73863228	0.93[ASN][1000 genomes]
rs73863230	0.93[ASN][1000 genomes]
rs73863232	1.00[AMR][1000 genomes]
rs73863237	0.93[ASN][1000 genomes]
rs73863241	1.00[AMR][1000 genomes]
rs73863242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73863243	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73863244	1.00[AMR][1000 genomes]
rs73863246	1.00[AMR][1000 genomes]
rs73863248	1.00[AMR][1000 genomes]
rs9992328	0.93[ASN][1000 genomes]
rs9998651	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166503000-166523800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166509000-166510400	Enhancers	Colon Smooth Muscle	Colon
3	chr4:166509600-166510200	Enhancers	Fetal Muscle Leg	muscle
4	chr4:166509600-166510400	Enhancers	Fetal Heart	heart
5	chr4:166509600-166510400	Enhancers	HUVEC	blood vessel

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