Variant report

Variant	rs73863248
Chromosome Location	chr4:166577715-166577716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs73861094	1.00[AMR][1000 genomes]
rs73861096	1.00[AMR][1000 genomes]
rs73861097	1.00[AMR][1000 genomes]
rs73863214	1.00[AMR][1000 genomes]
rs73863218	1.00[AMR][1000 genomes]
rs73863219	1.00[AMR][1000 genomes]
rs73863220	1.00[AMR][1000 genomes]
rs73863221	1.00[AMR][1000 genomes]
rs73863222	1.00[AMR][1000 genomes]
rs73863223	1.00[AMR][1000 genomes]
rs73863226	1.00[AMR][1000 genomes]
rs73863227	1.00[AMR][1000 genomes]
rs73863232	1.00[AMR][1000 genomes]
rs73863241	1.00[AMR][1000 genomes]
rs73863242	1.00[AMR][1000 genomes]
rs73863244	1.00[AMR][1000 genomes]
rs73863246	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7438657	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3486584	chr4:166565013-166680227	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3486585	chr4:166565013-166680227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166570000-166584200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166574200-166578600	Enhancers	HepG2	liver
3	chr4:166575800-166579000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:166576200-166578800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:166576400-166578000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:166576400-166578000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:166576600-166579200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:166576800-166578600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:166576800-166578800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:166576800-166579000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:166577400-166578400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:166577400-166579000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:166577400-166579600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:166577600-166578200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr4:166577600-166578200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr4:166577600-166578200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:166577600-166578800	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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